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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003892
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTACATTGTGAAACGGAGGAA
miRNA*
CCTCCGTTTCACAATGTAAGT
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTGTGATGTACTC
CCTCCGTTTCACAATGTAAGT
CATTTTAGCATTTTCCACATTTATATTGTTGTTATTGAATCTAGACATATATATTTATCTAGATTC
ATTAACATCAATATGAATATAGAAAATACTAGAATGAC
TTACATTGTGAAACGGAGGAA
GTACCGTATA
dot-bracket secondary structure
..(((..(((((.
(((((((((((((((((((((
((((((((.((((((...((((((((((.(((((.((((((((((............)))))))))
).))))).))))))))))...)))))).))))))))))
))))))))))))))))))).)
))))..))).
SIMILARITIES
miRBase
osa-MIR808
:
4e-54
PMRD
osa-miR808
:
4e-54
microPC
miR809
:
2e-22
UniProt
sp|Q6K1U0|P2C17_ORYSJ: 0.0003
RFAM
MIR1122: 2e-59
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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